Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs1199988 chr13:37642703 T/C 0.000356 174 4.17 24.23 26.27 KM Plot
PCPG rs1199989 chr13:37642569 A/G 0.000356 174 4.17 24.23 26.27 KM Plot
PCPG rs12032342 chr1:243834360 G/A 2.23E-5 172 25.08 27.33 16.83 KM Plot
PCPG rs12034588 chr1:243784392 T/A 0.000204 175 25.4 26.43 18.35 KM Plot
PCPG rs12050936 chr16:89585814 A/G 0.000269 177 26.78 25.67 19.25 KM Plot
PCPG rs12050940 chr16:89586010 A/G 0.000238 177 26.78 25.53 19.3 KM Plot
PCPG rs12054727 chr5:8024380 A/C 8.36E-5 170 25.53 27.2 12.15 KM Plot
PCPG rs12058087 chr1:56319257 C/G 1.8E-9 178 25.92 17.4 17.93 KM Plot
PCPG rs12070494 chr1:56348904 C/T 0.000212 178 27.2 22.63 15.6 KM Plot
PCPG rs12103234 chr16:89575771 G/A 0.000314 176 26.78 25.17 19.87 KM Plot
PCPG rs12106611 chr22:50242686 G/A 0.000156 178 25.47 20.17 15.18 KM Plot
PCPG rs12116484 chr1:247207285 A/G 0 177 25.6 24.22 2.93 KM Plot
PCPG rs12119904 chr1:56327241 G/T 1.42E-7 177 25.87 25.67 13.27 KM Plot
PCPG rs12120132 chr1:56322054 G/A 2.13E-7 173 25.87 20.02 15.6 KM Plot
PCPG rs12120876 chr1:247205960 A/T 1.91E-6 178 25.67 24.23 13.97 KM Plot